Raptor 3.0.1
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
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index.hpp File Reference

Provides raptor::raptor_index. More...

Go to the source code of this file.

Classes

class  raptor::raptor_index< data_t >

Concepts

concept  raptor::index_structure::compressible_from
concept  raptor::index_structure::is_compressed
concept  raptor::index_structure::is_hibf
concept  raptor::index_structure::is_ibf

Typedefs

using raptor::index_structure::hibf = hierarchical_interleaved_bloom_filter<seqan3::data_layout::uncompressed>
using raptor::index_structure::hibf_compressed = hierarchical_interleaved_bloom_filter<seqan3::data_layout::compressed>
using raptor::index_structure::ibf = seqan3::interleaved_bloom_filter<seqan3::data_layout::uncompressed>
using raptor::index_structure::ibf_compressed = seqan3::interleaved_bloom_filter<seqan3::data_layout::compressed>

Detailed Description

Provides raptor::raptor_index.

Author
Enrico Seiler <enrico.seiler AT fu-berlin.de>