Public Member Functions
std::vector< std::vector< std::string > > const &	bin_path () const
bool	compressed () const
double	fpr () const
data_t &	ibf ()
data_t const &	ibf () const
bool	is_hibf () const
template<seqan3::cereal_input_archive archive_t>
void	load_old_parameters (archive_t &archive)
	Load parameters from old index format for use with raptor upgrade.
template<seqan3::cereal_input_archive archive_t>
void	load_parameters (archive_t &archive)
raptor_index &	operator= (raptor_index &&)=default
raptor_index &	operator= (raptor_index const &)=default
uint8_t	parts () const
	raptor_index (build_arguments const &arguments)
	raptor_index (raptor_index &&)=default
	raptor_index (raptor_index const &)=default
template<typename other_data_t>
	raptor_index (raptor_index< other_data_t > &&other)
template<typename other_data_t>
	raptor_index (raptor_index< other_data_t > const &other)
	raptor_index (window const window_size, seqan3::shape const shape, uint8_t const parts, bool const compressed, std::vector< std::vector< std::string > > const &bin_path, double const fpr, data_t &&ibf)
template<seqan3::cereal_archive archive_t>
void	serialize (archive_t &archive)
	Serialisation support function.
seqan3::shape	shape () const
uint64_t	window_size () const

Static Public Attributes
static constexpr seqan3::data_layout	data_layout_mode = data_t::data_layout_mode
static constexpr uint32_t	version {2u}

Private Member Functions
template<seqan3::cereal_archive archive_t>
void	load_old_index (archive_t &archive)
	Load old index format for use with raptor upgrade.

Private Attributes
std::vector< std::vector< std::string > >	bin_path_ {}
bool	compressed_ {index_structure::is_compressed<data_t>}
double	fpr_ {}
data_t	ibf_ {}
bool	is_hibf_ {index_structure::is_hibf<data_t>}
uint8_t	parts_ {}
seqan3::shape	shape_ {}
uint64_t	window_size_ {}

Friends
template<seqan3::data_layout data_layout_mode_>
class	index_upgrader

Member Function Documentation

◆ serialize()

template<typename data_t = index_structure::ibf>

template<seqan3::cereal_archive archive_t>

void raptor::raptor_index< data_t >::serialize ( archive_t & archive )

inline

Serialisation support function.

Template Parameters

archive_t Type of archive; must satisfy seqan3::cereal_archive.

Parameters

[in] archive The archive being serialised from/to.

The documentation for this class was generated from the following file: